"""
Base class with plot generating commands.
Does not define any special non-GMT methods (savefig, show, etc).
"""
import contextlib
import numpy as np
import pandas as pd
from pygmt.clib import Session
from pygmt.exceptions import GMTError, GMTInvalidInput
from pygmt.helpers import (
build_arg_string,
data_kind,
dummy_context,
fmt_docstring,
is_nonstr_iter,
kwargs_to_strings,
use_alias,
)
class BasePlotting:
"""
Base class for Figure and Subplot.
Defines the plot generating methods and a hook for subclasses to insert
special arguments (the _preprocess method).
"""
def _preprocess(self, **kwargs): # pylint: disable=no-self-use
"""
Make any changes to kwargs or required actions before plotting.
This method is run before all plotting commands and can be used to
insert special arguments into the kwargs or make any actions that are
required before ``call_module``.
For example, the :class:`pygmt.Figure` needs this to tell the GMT
modules to plot to a specific figure.
This is a dummy method that does nothing.
Returns
-------
kwargs : dict
The same input kwargs dictionary.
Examples
--------
>>> base = BasePlotting()
>>> base._preprocess(resolution="low")
{'resolution': 'low'}
"""
return kwargs
@fmt_docstring
@use_alias(
R="region",
J="projection",
A="area_thresh",
C="lakes",
B="frame",
D="resolution",
I="rivers",
L="map_scale",
N="borders",
W="shorelines",
G="land",
S="water",
U="timestamp",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def coast(self, **kwargs):
"""
Plot continents, shorelines, rivers, and borders on maps
Plots grayshaded, colored, or textured land-masses [or water-masses] on
maps and [optionally] draws coastlines, rivers, and political
boundaries. Alternatively, it can (1) issue clip paths that will
contain all land or all water areas, or (2) dump the data to an ASCII
table. The data files come in 5 different resolutions: (**f**)ull,
(**h**)igh, (**i**)ntermediate, (**l**)ow, and (**c**)rude. The full
resolution files amount to more than 55 Mb of data and provide great
detail; for maps of larger geographical extent it is more economical to
use one of the other resolutions. If the user selects to paint the
land-areas and does not specify fill of water-areas then the latter
will be transparent (i.e., earlier graphics drawn in those areas will
not be overwritten). Likewise, if the water-areas are painted and no
land fill is set then the land-areas will be transparent.
A map projection must be supplied.
Full option list at :gmt-docs:`coast.html`
{aliases}
Parameters
----------
{J}
{R}
area_thresh : int, float, or str
``'min_area[/min_level/max_level][+ag|i|s|S][+r|l][+ppercent]'``
Features with an area smaller than min_area in km^2 or of
hierarchical level that is lower than min_level or higher than
max_level will not be plotted.
{B}
lakes : str or list
*fill*\ [**+l**\ |**+r**\ ]
Set the shade, color, or pattern for lakes and river-lakes. The default is
the fill chosen for wet areas set by the ``water``. Optionally, specify
separate fills by appending +l for lakes or +r for river-lakes, and passing
multiple strings in a list.
resolution : str
Selects the resolution of the data set to use ((f)ull, (h)igh,
(i)ntermediate, (l)ow, and (c)rude).
land : str
Select filling or clipping of “dry” areas.
rivers : str
``'river[/pen]'``
Draw rivers. Specify the type of rivers and [optionally] append pen
attributes.
map_scale : str
``'[g|j|J|n|x]refpoint'``
Draws a simple map scale centered on the reference point specified.
borders : str
``'border[/pen]'``
Draw political boundaries. Specify the type of boundary and
[optionally] append pen attributes
water : str
Select filling or clipping of “wet” areas.
{U}
{V}
shorelines : str
``'[level/]pen'``
Draw shorelines [Default is no shorelines]. Append pen attributes.
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
with Session() as lib:
lib.call_module("coast", build_arg_string(kwargs))
@fmt_docstring
@use_alias(
R="region",
J="projection",
B="frame",
C="cmap",
D="position",
F="box",
G="truncate",
I="shading",
W="scale",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", G="sequence", I="sequence", p="sequence")
def colorbar(self, **kwargs):
"""
Plot a gray or color scale-bar on maps.
Both horizontal and vertical scales are supported. For CPTs with
gradational colors (i.e., the lower and upper boundary of an interval
have different colors) we will interpolate to give a continuous scale.
Variations in intensity due to shading/illumination may be displayed by
setting the option -I. Colors may be spaced according to a linear
scale, all be equal size, or by providing a file with individual tile
widths.
Full option list at :gmt-docs:`colorbar.html`
{aliases}
Parameters
----------
frame : str or list
Set color bar boundary frame, labels, and axes attributes.
{CPT}
position : str
``[g|j|J|n|x]refpoint[+wlength[/width]][+e[b|f][length]][+h|v]
[+jjustify][+m[a|c|l|u]][+n[txt]][+odx[/dy]]``. Defines the
reference point on the map for the color scale using one of four
coordinate systems: (1) Use *g* for map (user) coordinates, (2) use
*j* or *J* for setting refpoint via a 2-char justification code
that refers to the (invisible) map domain rectangle, (3) use *n*
for normalized (0-1) coordinates, or (4) use *x* for plot
coordinates (inches, cm, etc.). All but *x* requires both *region*
and *projection* to be specified. Append +w followed by the length
and width of the color bar. If width is not specified then it is
set to 4% of the given length. Give a negative length to reverse
the scale bar. Append +h to get a horizontal scale
[Default is vertical (+v)]. By default, the anchor point on the
scale is assumed to be the bottom left corner (BL), but this can be
changed by appending +j followed by a 2-char justification code
*justify*.
box : bool or str
``[+cclearances][+gfill][+i[[gap/]pen]][+p[pen]][+r[radius]]
[+s[[dx/dy/][shade]]]``. If set to True, draws a rectangular
border around the color scale. Alternatively, specify a different
pen with +ppen. Add +gfill to fill the scale panel [no fill].
Append +cclearance where clearance is either gap, xgap/ygap, or
lgap/rgap/bgap/tgap where these items are uniform, separate in x-
and y-direction, or individual side spacings between scale and
border. Append +i to draw a secondary, inner border as well. We use
a uniform gap between borders of 2p and the MAP_DEFAULTS_PEN unless
other values are specified. Append +r to draw rounded rectangular
borders instead, with a 6p corner radius. You can override this
radius by appending another value. Finally, append +s to draw an
offset background shaded region. Here, dx/dy indicates the shift
relative to the foreground frame [4p/-4p] and shade sets the fill
style to use for shading [gray50].
truncate : list or str
``zlo/zhi`` Truncate the incoming CPT so that the lowest and
highest z-levels are to zlo and zhi. If one of these equal NaN then
we leave that end of the CPT alone. The truncation takes place
before the plotting.
scale : float
Multiply all z-values in the CPT by the provided scale. By default
the CPT is used as is.
shading : str or list or bool
Add illumination effects. Passing a single numerical value sets the
range of intensities from -value to +value. If not specified, 1 is
used. Alternatively, set ``shading=[low, high]`` to specify an
asymmetric intensity range from *low* to *high*. The default is no
illumination.
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
with Session() as lib:
lib.call_module("colorbar", build_arg_string(kwargs))
@fmt_docstring
@use_alias(
A="annotation",
B="frame",
C="interval",
G="label_placement",
J="projection",
L="limit",
Q="cut",
R="region",
S="resample",
U="timestamp",
V="verbose",
W="pen",
l="label",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", L="sequence", A="sequence_plus", p="sequence")
def grdcontour(self, grid, **kwargs):
"""
Convert grids or images to contours and plot them on maps
Takes a grid file name or an xarray.DataArray object as input.
Full option list at :gmt-docs:`grdcontour.html`
{aliases}
Parameters
----------
grid : str or xarray.DataArray
The file name of the input grid or the grid loaded as a DataArray.
interval : str or int
Specify the contour lines to generate.
- The filename of a `CPT` file where the color boundaries will
be used as contour levels.
- The filename of a 2 (or 3) column file containing the contour
levels (col 1), (C)ontour or (A)nnotate (col 2), and optional
angle (col 3)
- A fixed contour interval ``cont_int`` or a single contour with
``+[cont_int]``
annotation : str, int, or list
Specify or disable annotated contour levels, modifies annotated
contours specified in ``-C``.
- Specify a fixed annotation interval ``annot_int`` or a
single annotation level ``+[annot_int]``
- Disable all annotation with ``'-'``
- Optional label modifiers can be specified as a single string
``'[annot_int]+e'`` or with a list of options
``([annot_int], 'e', 'f10p', 'gred')``.
limit : str or list of 2 ints
Do no draw contours below `low` or above `high`, specify as string
``'[low]/[high]'`` or list ``[low,high]``.
cut : str or int
Do not draw contours with less than `cut` number of points.
resample : str or int
Resample smoothing factor.
{J}
{R}
{B}
label_placement : str
``[d|f|n|l|L|x|X]params``.
The required argument controls the placement of labels along the
quoted lines. It supports five controlling algorithms. See
:gmt-docs:`grdcontour.html#g` for details.
{U}
{V}
{W}
{XY}
label : str
Add a legend entry for the contour being plotted. Normally, the
annotated contour is selected for the legend. You can select the
regular contour instead, or both of them, by considering the label
to be of the format [*annotcontlabel*][/*contlabel*]. If either
label contains a slash (/) character then use ``|`` as the
separator for the two labels instead.
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(grid, None, None)
with Session() as lib:
if kind == "file":
file_context = dummy_context(grid)
elif kind == "grid":
file_context = lib.virtualfile_from_grid(grid)
else:
raise GMTInvalidInput("Unrecognized data type: {}".format(type(grid)))
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("grdcontour", arg_str)
@fmt_docstring
@use_alias(
A="img_out",
B="frame",
C="cmap",
D="img_in",
E="dpi",
G="bit_color",
I="shading",
J="projection",
M="monochrome",
N="no_clip",
Q="nan_transparent",
R="region",
U="timestamp",
V="verbose",
X="xshift",
Y="yshift",
n="interpolation",
p="perspective",
t="transparency",
x="cores",
)
@kwargs_to_strings(R="sequence", p="sequence")
def grdimage(self, grid, **kwargs):
"""
Project and plot grids or images.
Reads a 2-D grid file and produces a gray-shaded (or colored) map by
building a rectangular image and assigning pixels a gray-shade (or
color) based on the z-value and the CPT file. Optionally, illumination
may be added by providing a file with intensities in the (-1,+1) range
or instructions to derive intensities from the input data grid. Values
outside this range will be clipped. Such intensity files can be created
from the grid using `grdgradient` and, optionally, modified by
`grdmath` or `grdhisteq`. If GMT is built with GDAL support, *grid* can
be an image file (geo-referenced or not). In this case the image can
optionally be illuminated with the file provided via the *shading*
option. Here, if image has no coordinates then those of the intensity
file will be used.
When using map projections, the grid is first resampled on a new
rectangular grid with the same dimensions. Higher resolution images can
be obtained by using the *dpi* option. To obtain the resampled value
(and hence shade or color) of each map pixel, its location is inversely
projected back onto the input grid after which a value is interpolated
between the surrounding input grid values. By default bi-cubic
interpolation is used. Aliasing is avoided by also forward projecting
the input grid nodes. If two or more nodes are projected onto the same
pixel, their average will dominate in the calculation of the pixel
value. Interpolation and aliasing is controlled with the
*interpolation* option.
The *region* option can be used to select a map region larger or
smaller than that implied by the extent of the grid.
Full option list at :gmt-docs:`grdimage.html`
{aliases}
Parameters
----------
grid : str or xarray.DataArray
The file name or a DataArray containing the input 2-D gridded data
set or image to be plotted (See GRID FILE FORMATS at
:gmt-docs:`grdimage.html#grid-file-formats`).
img_out : str
``out_img[=driver]``.
Save an image in a raster format instead of PostScript. Use
extension .ppm for a Portable Pixel Map format which is the only
raster format GMT can natively write. For GMT installations
configured with GDAL support there are more choices: Append
*out_img* to select the image file name and extension. If the
extension is one of .bmp, .gif, .jpg, .png, or .tif then no driver
information is required. For other output formats you must append
the required GDAL driver. The *driver* is the driver code name used
by GDAL; see your GDAL installation's documentation for available
drivers. Append a **+c**\\ *options* string where options is a list
of one or more concatenated number of GDAL **-co** options. For
example, to write a GeoPDF with the TerraGo format use
``=PDF+cGEO_ENCODING=OGC_BP``. Notes: (1) If a tiff file (.tif) is
selected then we will write a GeoTiff image if the GMT projection
syntax translates into a PROJ syntax, otherwise a plain tiff file
is produced. (2) Any vector elements will be lost.
{B}
{CPT}
img_in : str
``[r]``
GMT will automatically detect standard image files (Geotiff, TIFF,
JPG, PNG, GIF, etc.) and will read those via GDAL. For very obscure
image formats you may need to explicitly set *img_in*, which
specifies that the grid is in fact an image file to be read via
GDAL. Append **r** to assign the region specified by *region*
to the image. For example, if you have used ``region='d'`` then the
image will be assigned a global domain. This mode allows you to
project a raw image (an image without referencing coordinates).
dpi : int
``[i|dpi]``.
Sets the resolution of the projected grid that will be created if a
map projection other than Linear or Mercator was selected [100]. By
default, the projected grid will be of the same size (rows and
columns) as the input file. Specify **i** to use the PostScript
image operator to interpolate the image at the device resolution.
bit_color : str
``color[+b|f]``.
This option only applies when a resulting 1-bit image otherwise
would consist of only two colors: black (0) and white (255). If so,
this option will instead use the image as a transparent mask and
paint the mask with the given color. Append **+b** to paint the
background pixels (1) or **+f** for the foreground pixels
[Default].
shading : str
``[intensfile|intensity|modifiers]``.
Give the name of a grid file with intensities in the (-1,+1) range,
or a constant intensity to apply everywhere (affects the ambient
light). Alternatively, derive an intensity grid from the input data
grid via a call to `grdgradient`; append **+a**\\ *azimuth*,
**+n**\\ *args*, and **+m**\\ *ambient* to specify azimuth,
intensity, and ambient arguments for that module, or just give
**+d** to select the default arguments (``+a-45+nt1+m0``). If you
want a more specific intensity scenario then run `grdgradient`
separately first. If we should derive intensities from another file
than grid, specify the file with suitable modifiers [Default is no
illumination].
{J}
monochrome : bool
Force conversion to monochrome image using the (television) YIQ
transformation. Cannot be used with *nan_transparent*.
no_clip : bool
Do not clip the image at the map boundary (only relevant for
non-rectangular maps).
nan_transparent : bool
Make grid nodes with z = NaN transparent, using the color-masking
feature in PostScript Level 3 (the PS device must support PS Level
3).
{R}
{V}
{XY}
{n}
{p}
{t}
{x}
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(grid, None, None)
with Session() as lib:
if kind == "file":
file_context = dummy_context(grid)
elif kind == "grid":
file_context = lib.virtualfile_from_grid(grid)
else:
raise GMTInvalidInput("Unrecognized data type: {}".format(type(grid)))
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("grdimage", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
Jz="zscale",
JZ="zsize",
B="frame",
C="cmap",
G="drapegrid",
N="plane",
Q="surftype",
Wc="contourpen",
Wm="meshpen",
Wf="facadepen",
I="shading",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def grdview(self, grid, **kwargs):
"""
Create 3-D perspective image or surface mesh from a grid.
Reads a 2-D grid file and produces a 3-D perspective plot by drawing a
mesh, painting a colored/gray-shaded surface made up of polygons, or by
scanline conversion of these polygons to a raster image. Options
include draping a data set on top of a surface, plotting of contours on
top of the surface, and apply artificial illumination based on
intensities provided in a separate grid file.
Full option list at :gmt-docs:`grdview.html`
{aliases}
Parameters
----------
grid : str or xarray.DataArray
The file name of the input relief grid or the grid loaded as a
DataArray.
zscale/zsize : float or str
Set z-axis scaling or z-axis size.
{B}
cmap : str
The name of the color palette table to use.
drapegrid : str or xarray.DataArray
The file name or a DataArray of the image grid to be draped on top
of the relief provided by grid. [Default determines colors from
grid]. Note that -Jz and -N always refers to the grid. The
drapegrid only provides the information pertaining to colors, which
(if drapegrid is a grid) will be looked-up via the CPT (see -C).
plane : float or str
``level[+gfill]``.
Draws a plane at this z-level. If the optional color is provided
via the +g modifier, and the projection is not oblique, the frontal
facade between the plane and the data perimeter is colored.
surftype : str
Specifies cover type of the grid.
Select one of following settings:
1. 'm' for mesh plot [Default].
2. 'mx' or 'my' for waterfall plots (row or column profiles).
3. 's' for surface plot.
4. 'i' for image plot.
5. 'c'. Same as 'i' but will make nodes with z = NaN transparent.
For any of these choices, you may force a monochrome image by
appending the modifier +m.
contourpen : str
Draw contour lines on top of surface or mesh (not image). Append
pen attributes used for the contours.
meshpen : str
Sets the pen attributes used for the mesh. You must also select -Qm
or -Qsm for meshlines to be drawn.
facadepen :str
Sets the pen attributes used for the facade. You must also select
-N for the facade outline to be drawn.
shading : str
Provide the name of a grid file with intensities in the (-1,+1)
range, or a constant intensity to apply everywhere (affects the
ambient light). Alternatively, derive an intensity grid from the
input data grid reliefgrid via a call to ``grdgradient``; append
``+aazimuth``, ``+nargs``, and ``+mambient`` to specify azimuth,
intensity, and ambient arguments for that module, or just give
``+d`` to select the default arguments (``+a-45+nt1+m0``).
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(grid, None, None)
with Session() as lib:
if kind == "file":
file_context = dummy_context(grid)
elif kind == "grid":
file_context = lib.virtualfile_from_grid(grid)
else:
raise GMTInvalidInput(f"Unrecognized data type for grid: {type(grid)}")
with contextlib.ExitStack() as stack:
if "G" in kwargs: # deal with kwargs["G"] if drapegrid is xr.DataArray
drapegrid = kwargs["G"]
if data_kind(drapegrid) in ("file", "grid"):
if data_kind(drapegrid) == "grid":
drape_context = lib.virtualfile_from_grid(drapegrid)
kwargs["G"] = stack.enter_context(drape_context)
else:
raise GMTInvalidInput(
f"Unrecognized data type for drapegrid: {type(drapegrid)}"
)
fname = stack.enter_context(file_context)
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("grdview", arg_str)
@fmt_docstring
@use_alias(
A="straight_line",
B="frame",
C="cmap",
D="offset",
E="error_bar",
F="connection",
G="color",
I="intensity",
J="projection",
L="close",
N="no_clip",
R="region",
S="style",
U="timestamp",
V="verbose",
W="pen",
X="xshift",
Y="yshift",
Z="zvalue",
i="columns",
l="label",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", i="sequence_comma", p="sequence")
def plot(self, x=None, y=None, data=None, sizes=None, direction=None, **kwargs):
"""
Plot lines, polygons, and symbols in 2-D.
Takes a matrix, (x,y) pairs, or a file name as input and plots lines,
polygons, or symbols at those locations on a map.
Must provide either *data* or *x* and *y*.
If providing data through *x* and *y*, *color* can be a 1d array that
will be mapped to a colormap.
If a symbol is selected and no symbol size given, then plot will
interpret the third column of the input data as symbol size. Symbols
whose size is <= 0 are skipped. If no symbols are specified then the
symbol code (see *style* below) must be present as last column in the
input. If *style* is not used, a line connecting the data points will
be drawn instead. To explicitly close polygons, use *close*. Select a
fill with *color*. If *color* is set, *pen* will control whether the
polygon outline is drawn or not. If a symbol is selected, *color* and
*pen* determines the fill and outline/no outline, respectively.
Full option list at :gmt-docs:`plot.html`
{aliases}
Parameters
----------
x/y : float or 1d arrays
The x and y coordinates, or arrays of x and y coordinates of the
data points
data : str or 2d array
Either a data file name or a 2d numpy array with the tabular data.
Use option *columns* (i) to choose which columns are x, y, color,
and size, respectively.
sizes : 1d array
The sizes of the data points in units specified in *style* (S).
Only valid if using *x* and *y*.
direction : list of two 1d arrays
If plotting vectors (using ``style='V'`` or ``style='v'``), then
should be a list of two 1d arrays with the vector directions. These
can be angle and length, azimuth and length, or x and y components,
depending on the style options chosen.
{J}
{R}
straight_line : bool or str
``[m|p|x|y]``.
By default, geographic line segments are drawn as great circle
arcs. To draw them as straight lines, use *straight_line*.
Alternatively, add **m** to draw the line by first following a
meridian, then a parallel. Or append **p** to start following a
parallel, then a meridian. (This can be practical to draw a line
along parallels, for example). For Cartesian data, points are
simply connected, unless you append **x** or **y** to draw
stair-case curves that whose first move is along *x* or *y*,
respectively.
{B}
{CPT}
offset : str
``dx/dy``.
Offset the plot symbol or line locations by the given amounts
*dx/dy* [Default is no offset]. If *dy* is not given it is set
equal to *dx*.
error_bar : bool or str
``[x|y|X|Y][+a][+cl|f][+n][+wcap][+ppen]``.
Draw symmetrical error bars. Full documentation is at
:gmt-docs:`plot.html#e`.
connection : str
``[c|n|r][a|f|s|r|refpoint]``.
Alter the way points are connected (by specifying a *scheme*) and
data are grouped (by specifying a *method*). Append one of three
line connection schemes:
- **c** : Draw continuous line segments for each group [Default].
- **r** : Draw line segments from a reference point reset for each
group.
- **n** : Draw networks of line segments between all points in
each group.
Optionally, append the one of four segmentation methods to define
the group:
- **a** : Ignore all segment headers, i.e., let all points belong
to a single group, and set group reference point to the very
first point of the first file.
- **f** : Consider all data in each file to be a single separate
group and reset the group reference point to the first point of
each group.
- **s** : Segment headers are honored so each segment is a group;
the group reference point is reset to the first point of each
incoming segment [Default].
- **r** : Same as **s**, but the group reference point is reset
after each record to the previous point (this method is only
available with the ``connection='r'`` scheme).
Instead of the codes **a**|**f**|**s**|**r** you may append the
coordinates of a *refpoint* which will serve as a fixed external
reference point for all groups.
{G}
intensity : float or bool
Provide an *intens* value (nominally in the -1 to +1 range) to
modulate the fill color by simulating illumination [None]. If
using ``intensity=True``, we will instead read *intens* from the
first data column after the symbol parameters (if given).
close : str
``[+b|d|D][+xl|r|x0][+yl|r|y0][+ppen]``.
Force closed polygons. Full documentation is at
:gmt-docs:`plot.html#l`.
no_clip : bool or str
``'[c|r]'``.
Do NOT clip symbols that fall outside map border [Default plots
points whose coordinates are strictly inside the map border only].
The option does not apply to lines and polygons which are always
clipped to the map region. For periodic (360-longitude) maps we
must plot all symbols twice in case they are clipped by the
repeating boundary. ``no_clip=True`` will turn off clipping and not
plot repeating symbols. Use ``no_clip="r"`` to turn off clipping
but retain the plotting of such repeating symbols, or use
``no_clip="c"`` to retain clipping but turn off plotting of
repeating symbols.
style : str
Plot symbols (including vectors, pie slices, fronts, decorated or
quoted lines).
{W}
{U}
{V}
{XY}
zvalue : str
``value|file``.
Instead of specifying a symbol or polygon fill and outline color
via **color** and **pen**, give both a *value* via **zvalue** and a
color lookup table via **cmap**. Alternatively, give the name of a
*file* with one z-value (read from the last column) for each
polygon in the input data. To apply it to the fill color, use
``color='+z'``. To apply it to the pen color, append **+z** to
**pen**.
columns : str or 1d array
Choose which columns are x, y, color, and size, respectively if
input is provided via *data*. E.g. ``columns = [0, 1]`` or
``columns = '0,1'`` if the *x* values are stored in the first
column and *y* values in the second one. Note: zero-based
indexing is used.
label : str
Add a legend entry for the symbol or line being plotted.
{p}
{t}
*transparency* can also be a 1d array to set varying transparency
for symbols.
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(data, x, y)
extra_arrays = []
if "S" in kwargs and kwargs["S"][0] in "vV" and direction is not None:
extra_arrays.extend(direction)
if "G" in kwargs and not isinstance(kwargs["G"], str):
if kind != "vectors":
raise GMTInvalidInput(
"Can't use arrays for color if data is matrix or file."
)
extra_arrays.append(kwargs["G"])
del kwargs["G"]
if sizes is not None:
if kind != "vectors":
raise GMTInvalidInput(
"Can't use arrays for sizes if data is matrix or file."
)
extra_arrays.append(sizes)
if "t" in kwargs and is_nonstr_iter(kwargs["t"]):
extra_arrays.append(kwargs["t"])
kwargs["t"] = ""
with Session() as lib:
# Choose how data will be passed in to the module
if kind == "file":
file_context = dummy_context(data)
elif kind == "matrix":
file_context = lib.virtualfile_from_matrix(data)
elif kind == "vectors":
file_context = lib.virtualfile_from_vectors(
np.atleast_1d(x), np.atleast_1d(y), *extra_arrays
)
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("plot", arg_str)
@fmt_docstring
@use_alias(
A="straight_line",
B="frame",
C="cmap",
D="offset",
G="color",
I="intensity",
J="projection",
Jz="zscale",
JZ="zsize",
L="close",
N="no_clip",
Q="no_sort",
R="region",
S="style",
V="verbose",
W="pen",
X="xshift",
Y="yshift",
Z="zvalue",
i="columns",
l="label",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", i="sequence_comma", p="sequence")
def plot3d(
self, x=None, y=None, z=None, data=None, sizes=None, direction=None, **kwargs
):
"""
Plot lines, polygons, and symbols in 3-D
Takes a matrix, (x,y,z) triplets, or a file name as input and plots
lines, polygons, or symbols at those locations in 3-D.
Must provide either *data* or *x*, *y* and *z*.
If providing data through *x*, *y* and *z*, *color* can be a 1d array
that will be mapped to a colormap.
If a symbol is selected and no symbol size given, then plot3d will
interpret the fourth column of the input data as symbol size. Symbols
whose size is <= 0 are skipped. If no symbols are specified then the
symbol code (see *style* below) must be present as last column in the
input. If *style* is not used, a line connecting the data points will
be drawn instead. To explicitly close polygons, use *close*. Select a
fill with *color*. If *color* is set, *pen* will control whether the
polygon outline is drawn or not. If a symbol is selected, *color* and
*pen* determines the fill and outline/no outline, respectively.
Full option list at :gmt-docs:`plot3d.html`
{aliases}
Parameters
----------
x/y/z : float or 1d arrays
The x, y, and z coordinates, or arrays of x, y and z coordinates of
the data points
data : str or 2d array
Either a data file name or a 2d numpy array with the tabular data.
Use option *columns* (i) to choose which columns are x, y, z,
color, and size, respectively.
sizes : 1d array
The sizes of the data points in units specified in *style* (S).
Only valid if using *x*, *y* and *z*.
direction : list of two 1d arrays
If plotting vectors (using ``style='V'`` or ``style='v'``), then
should be a list of two 1d arrays with the vector directions. These
can be angle and length, azimuth and length, or x and y components,
depending on the style options chosen.
{J}
zscale/zsize : float or str
Set z-axis scaling or z-axis size.
{R}
straight_line : bool or str
``[m|p|x|y]``.
By default, geographic line segments are drawn as great circle
arcs. To draw them as straight lines, use *straight_line*.
Alternatively, add **m** to draw the line by first following a
meridian, then a parallel. Or append **p** to start following a
parallel, then a meridian. (This can be practical to draw a line
along parallels, for example). For Cartesian data, points are
simply connected, unless you append **x** or **y** to draw
stair-case curves that whose first move is along *x* or *y*,
respectively. **Note**: The **straight_line** option requires
constant *z*-coordinates.
{B}
{CPT}
offset : str
``dx/dy[/dz]``.
Offset the plot symbol or line locations by the given amounts
*dx/dy*[*dz*] [Default is no offset].
{G}
intensity : float or bool
Provide an *intens* value (nominally in the -1 to +1 range) to
modulate the fill color by simulating illumination [None]. If
using ``intensity=True``, we will instead read *intens* from the
first data column after the symbol parameters (if given).
close : str
``[+b|d|D][+xl|r|x0][+yl|r|y0][+ppen]``.
Force closed polygons. Full documentation is at
:gmt-docs:`plot3d.html#l`.
no_clip : bool or str
``[c|r]``.
Do NOT clip symbols that fall outside map border [Default plots
points whose coordinates are strictly inside the map border only].
The option does not apply to lines and polygons which are always
clipped to the map region. For periodic (360-longitude) maps we
must plot all symbols twice in case they are clipped by the
repeating boundary. ``no_clip=True`` will turn off clipping and not
plot repeating symbols. Use ``no_clip="r"`` to turn off clipping
but retain the plotting of such repeating symbols, or use
``no_clip="c"`` to retain clipping but turn off plotting of
repeating symbols.
no_sort : bool
Turn off the automatic sorting of items based on their distance
from the viewer. The default is to sort the items so that items in
the foreground are plotted after items in the background.
style : str
Plot symbols. Full documentation is at :gmt-docs:`plot3d.html#s`.
{U}
{V}
{W}
{XY}
zvalue : str
``value|file``.
Instead of specifying a symbol or polygon fill and outline color
via **color** and **pen**, give both a *value* via **zvalue** and a
color lookup table via **cmap**. Alternatively, give the name of a
*file* with one z-value (read from the last column) for each
polygon in the input data. To apply it to the fill color, use
``color='+z'``. To apply it to the pen color, append **+z** to
**pen**.
label : str
Add a legend entry for the symbol or line being plotted.
{p}
{t}
*transparency* can also be a 1d array to set varying transparency
for symbols.
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(data, x, y, z)
extra_arrays = []
if "S" in kwargs and kwargs["S"][0] in "vV" and direction is not None:
extra_arrays.extend(direction)
if "G" in kwargs and not isinstance(kwargs["G"], str):
if kind != "vectors":
raise GMTInvalidInput(
"Can't use arrays for color if data is matrix or file."
)
extra_arrays.append(kwargs["G"])
del kwargs["G"]
if sizes is not None:
if kind != "vectors":
raise GMTInvalidInput(
"Can't use arrays for sizes if data is matrix or file."
)
extra_arrays.append(sizes)
if "t" in kwargs and is_nonstr_iter(kwargs["t"]):
extra_arrays.append(kwargs["t"])
kwargs["t"] = ""
with Session() as lib:
# Choose how data will be passed in to the module
if kind == "file":
file_context = dummy_context(data)
elif kind == "matrix":
file_context = lib.virtualfile_from_matrix(data)
elif kind == "vectors":
file_context = lib.virtualfile_from_vectors(
np.atleast_1d(x), np.atleast_1d(y), np.atleast_1d(z), *extra_arrays
)
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("plot3d", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
B="frame",
S="skip",
G="label_placement",
W="pen",
L="triangular_mesh_pen",
N="no_clip",
i="columns",
l="label",
C="levels",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", i="sequence_comma", p="sequence")
def contour(self, x=None, y=None, z=None, data=None, **kwargs):
"""
Contour table data by direct triangulation.
Takes a matrix, (x,y,z) pairs, or a file name as input and plots lines,
polygons, or symbols at those locations on a map.
Must provide either *data* or *x*, *y*, and *z*.
[TODO: Insert more documentation]
Full option list at :gmt-docs:`contour.html`
{aliases}
Parameters
----------
x/y/z : 1d arrays
Arrays of x and y coordinates and values z of the data points.
data : str or 2d array
Either a data file name or a 2d numpy array with the tabular data.
{J}
{R}
A : bool or str
``'[m|p|x|y]'``
By default, geographic line segments are drawn as great circle
arcs. To draw them as straight lines, use *A*.
{B}
levels : str
Contour file or level(s)
D : str
Dump contour coordinates
E : str
Network information
label_placement : str
Placement of labels
I : bool
Color the triangles using CPT
triangular_mesh_pen : str
Pen to draw the underlying triangulation (default none)
no_clip : bool
Do NOT clip contours or image at the boundaries [Default will clip
to fit inside region].
Q : float or str
Do not draw contours with less than cut number of points.
``'[cut[unit]][+z]'``
skip : bool or str
Skip input points outside region ``'[p|t]'``
{W}
label : str
Add a legend entry for the contour being plotted. Normally, the
annotated contour is selected for the legend. You can select the
regular contour instead, or both of them, by considering the label
to be of the format [*annotcontlabel*][/*contlabel*]. If either
label contains a slash (/) character then use ``|`` as the
separator for the two labels instead.
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
kind = data_kind(data, x, y, z)
if kind == "vectors" and z is None:
raise GMTInvalidInput("Must provided both x, y, and z.")
with Session() as lib:
# Choose how data will be passed in to the module
if kind == "file":
file_context = dummy_context(data)
elif kind == "matrix":
file_context = lib.virtualfile_from_matrix(data)
elif kind == "vectors":
file_context = lib.virtualfile_from_vectors(x, y, z)
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("contour", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
Jz="zscale",
JZ="zsize",
B="frame",
L="map_scale",
Td="rose",
Tm="compass",
U="timestamp",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def basemap(self, **kwargs):
"""
Plot base maps and frames for the figure.
Creates a basic or fancy basemap with axes, fill, and titles. Several
map projections are available, and the user may specify separate
tick-mark intervals for boundary annotation, ticking, and [optionally]
gridlines. A simple map scale or directional rose may also be plotted.
At least one of the options *frame*, *map_scale*, *rose* or *compass*
must be specified.
Full option list at :gmt-docs:`basemap.html`
{aliases}
Parameters
----------
{J}
zscale/zsize : float or str
Set z-axis scaling or z-axis size.
{R}
{B}
map_scale : str
``'[g|j|J|n|x]refpoint'``
Draws a simple map scale centered on the reference point specified.
rose : str
Draws a map directional rose on the map at the location defined by
the reference and anchor points.
compass : str
Draws a map magnetic rose on the map at the location defined by the
reference and anchor points
{U}
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
if not ("B" in kwargs or "L" in kwargs or "Td" in kwargs or "Tm" in kwargs):
raise GMTInvalidInput(
"At least one of frame, map_scale, compass, or rose must be specified."
)
with Session() as lib:
lib.call_module("basemap", build_arg_string(kwargs))
@fmt_docstring
@use_alias(
R="region",
J="projection",
D="position",
F="box",
S="style",
U="timestamp",
V="verbose",
X="xshift",
Y="yshift",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def logo(self, **kwargs):
"""
Plot the GMT logo.
By default, the GMT logo is 2 inches wide and 1 inch high and
will be positioned relative to the current plot origin.
Use various options to change this and to place a transparent or
opaque rectangular map panel behind the GMT logo.
Full option list at :gmt-docs:`gmtlogo.html`.
{aliases}
Parameters
----------
{J}
{R}
position : str
``'[g|j|J|n|x]refpoint+wwidth[+jjustify][+odx[/dy]]'``.
Sets reference point on the map for the image.
box : bool or str
Without further options, draws a rectangular border around the
GMT logo.
style : str
``l|n|u``.
Control what is written beneath the map portion of the logo.
- **l** to plot the text label "The Generic Mapping Tools"
[Default]
- **n** to skip the label placement
- **u** to place the URL to the GMT site
{U}
{V}
{XY}
{t}
"""
kwargs = self._preprocess(**kwargs)
with Session() as lib:
lib.call_module("logo", build_arg_string(kwargs))
@fmt_docstring
@use_alias(
R="region",
J="projection",
D="position",
F="box",
M="monochrome",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def image(self, imagefile, **kwargs):
"""
Place images or EPS files on maps.
Reads an Encapsulated PostScript file or a raster image file and plots
it on a map.
Full option list at :gmt-docs:`image.html`
{aliases}
Parameters
----------
imagefile : str
This must be an Encapsulated PostScript (EPS) file or a raster
image. An EPS file must contain an appropriate BoundingBox. A
raster file can have a depth of 1, 8, 24, or 32 bits and is read
via GDAL. Note: If GDAL was not configured during GMT installation
then only EPS files are supported.
{J}
{R}
position : str
``'[g|j|J|n|x]refpoint+rdpi+w[-]width[/height][+jjustify]
[+nnx[/ny]][+odx[/dy]]'`` Sets reference point on the map for the
image.
box : bool or str
``'[+cclearances][+gfill][+i[[gap/]pen]][+p[pen]][+r[radius]]
[+s[[dx/dy/][shade]]]'`` Without further options, draws a
rectangular border around the image using **MAP_FRAME_PEN**.
monochrome : bool
Convert color image to monochrome grayshades using the (television)
YIQ-transformation.
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
with Session() as lib:
arg_str = " ".join([imagefile, build_arg_string(kwargs)])
lib.call_module("image", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
D="position",
F="box",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def legend(self, spec=None, position="JTR+jTR+o0.2c", box="+gwhite+p1p", **kwargs):
"""
Plot legends on maps.
Makes legends that can be overlaid on maps. Reads specific
legend-related information from an input file, or automatically creates
legend entries from plotted symbols that have labels. Unless otherwise
noted, annotations will be made using the primary annotation font and
size in effect (i.e., FONT_ANNOT_PRIMARY).
Full option list at :gmt-docs:`legend.html`
{aliases}
Parameters
----------
spec : None or str
Either None (default) for using the automatically generated legend
specification file, or a filename pointing to the legend
specification file.
{J}
{R}
position : str
``'[g|j|J|n|x]refpoint+wwidth[/height][+jjustify][+lspacing]
[+odx[/dy]]'`` Defines the reference point on the map for the
legend. By default, uses 'JTR+jTR+o0.2c' which places the legend at
the top-right corner inside the map frame, with a 0.2 cm offset.
box : bool or str
``'[+cclearances][+gfill][+i[[gap/]pen]][+p[pen]][+r[radius]]
[+s[[dx/dy/][shade]]]'`` Without further options, draws a
rectangular border around the legend using **MAP_FRAME_PEN**. By
default, uses '+gwhite+p1p' which draws a box around the legend
using a 1 point black pen and adds a white background.
{V}
{XY}
{p}
{t}
"""
kwargs = self._preprocess(**kwargs)
if "D" not in kwargs:
kwargs["D"] = position
if "F" not in kwargs:
kwargs["F"] = box
with Session() as lib:
if spec is None:
specfile = ""
elif data_kind(spec) == "file":
specfile = spec
else:
raise GMTInvalidInput("Unrecognized data type: {}".format(type(spec)))
arg_str = " ".join([specfile, build_arg_string(kwargs)])
lib.call_module("legend", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
B="frame",
C="clearance",
D="offset",
G="fill",
N="no_clip",
V="verbose",
W="pen",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(
R="sequence",
textfiles="sequence_space",
angle="sequence_comma",
font="sequence_comma",
justify="sequence_comma",
p="sequence",
)
def text(
self,
textfiles=None,
x=None,
y=None,
position=None,
text=None,
angle=None,
font=None,
justify=None,
**kwargs,
):
"""
Plot or typeset text strings of variable size, font type, and
orientation.
Must provide at least one of the following combinations as input:
- *textfiles*
- *x*, *y*, and *text*
- *position* and *text*
Full option list at :gmt-docs:`text.html`
{aliases}
Parameters
----------
textfiles : str or list
A text data file name, or a list of filenames containing 1 or more
records with (x, y[, angle, font, justify], text).
x/y : float or 1d arrays
The x and y coordinates, or an array of x and y coordinates to plot
the text
position : str
Sets reference point on the map for the text by using x,y
coordinates extracted from *region* instead of providing them
through *x* and *y*. Specify with a two letter (order independent)
code, chosen from:
* Horizontal: L(eft), C(entre), R(ight)
* Vertical: T(op), M(iddle), B(ottom)
For example, position="TL" plots the text at the Upper Left corner
of the map.
text : str or 1d array
The text string, or an array of strings to plot on the figure
angle: int, float, str or bool
Set the angle measured in degrees counter-clockwise from
horizontal. E.g. 30 sets the text at 30 degrees. If no angle is
explicitly given (i.e. angle=True) then the input textfile(s) must
have this as a column.
font : str or bool
Set the font specification with format "size,font,color" where size
is text size in points, font is the font to use, and color sets the
font color. E.g. "12p,Helvetica-Bold,red" selects a 12p red
Helvetica-Bold font. If no font info is explicitly given (i.e.
font=True), then the input textfile(s) must have this information
in one of its columns.
justify : str or bool
Set the alignment which refers to the part of the text string that
will be mapped onto the (x,y) point. Choose a 2 character
combination of L, C, R (for left, center, or right) and T, M, B for
top, middle, or bottom. E.g., BL for lower left. If no
justification is explicitly given (i.e. justify=True), then the
input textfile(s) must have this as a column.
{J}
{R}
clearance : str
``[dx/dy][+to|O|c|C]``
Adjust the clearance between the text and the surrounding box
[15%]. Only used if *pen* or *fill* are specified. Append the unit
you want ('c' for cm, 'i' for inch, or 'p' for point; if not given
we consult 'PROJ_LENGTH_UNIT') or '%' for a percentage of the
font size. Optionally, use modifier '+t' to set the shape of the
textbox when using *fill* and/or *pen*. Append lower case 'o' to
get a straight rectangle [Default]. Append upper case 'O' to get a
rounded rectangle. In paragraph mode (*paragraph*) you can also
append lower case 'c' to get a concave rectangle or append upper
case 'C' to get a convex rectangle.
fill : str
Sets the shade or color used for filling the text box [Default is
no fill].
offset : str
``[j|J]dx[/dy][+v[pen]]``
Offsets the text from the projected (x,y) point by dx,dy [0/0]. If
dy is not specified then it is set equal to dx. Use offset='j' to
offset the text away from the point instead (i.e., the text
justification will determine the direction of the shift). Using
offset='J' will shorten diagonal offsets at corners by sqrt(2).
Optionally, append '+v' which will draw a line from the original
point to the shifted point; append a pen to change the attributes
for this line.
pen : str
Sets the pen used to draw a rectangle around the text string
(see *clearance*) [Default is width = default, color = black,
style = solid].
no_clip : bool
Do NOT clip text at map boundaries [Default is False, i.e. will
clip].
{V}
{XY}
{p}
{t}
"""
# pylint: disable=too-many-locals
# pylint: disable=too-many-branches
kwargs = self._preprocess(**kwargs)
# Ensure inputs are either textfiles, x/y/text, or position/text
if position is None:
kind = data_kind(textfiles, x, y, text)
else:
if x is not None or y is not None:
raise GMTInvalidInput(
"Provide either position only, or x/y pairs, not both"
)
kind = "vectors"
if kind == "vectors" and text is None:
raise GMTInvalidInput("Must provide text with x/y pairs or position")
# Build the `-F` argument in gmt text.
if "F" not in kwargs.keys() and (
(
position is not None
or angle is not None
or font is not None
or justify is not None
)
):
kwargs.update({"F": ""})
if angle is not None and isinstance(angle, (int, float, str)):
kwargs["F"] += f"+a{str(angle)}"
if font is not None and isinstance(font, str):
kwargs["F"] += f"+f{font}"
if justify is not None and isinstance(justify, str):
kwargs["F"] += f"+j{justify}"
if position is not None and isinstance(position, str):
kwargs["F"] += f'+c{position}+t"{text}"'
extra_arrays = []
# If an array of transparency is given, GMT will read it from
# the last numerical column per data record.
if "t" in kwargs and is_nonstr_iter(kwargs["t"]):
extra_arrays.append(kwargs["t"])
kwargs["t"] = ""
with Session() as lib:
file_context = dummy_context(textfiles) if kind == "file" else ""
if kind == "vectors":
if position is not None:
file_context = dummy_context("")
else:
file_context = lib.virtualfile_from_vectors(
np.atleast_1d(x),
np.atleast_1d(y),
*extra_arrays,
# text must be in str type, see issue #706
np.atleast_1d(text).astype(str),
)
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("text", arg_str)
@fmt_docstring
@use_alias(
R="region",
J="projection",
B="frame",
C="offset",
N="no_clip",
V="verbose",
X="xshift",
Y="yshift",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", p="sequence")
def meca(
self,
spec,
scale,
longitude=None,
latitude=None,
depth=None,
convention=None,
component="full",
plot_longitude=None,
plot_latitude=None,
**kwargs,
):
"""
Plot focal mechanisms.
Full option list at :gmt-docs:`supplements/seis/meca.html`
Note
----
Currently, labeling of beachballs with text strings is only
supported via providing a file to `spec` as input.
{aliases}
Parameters
----------
spec: dict, 1D array, 2D array, pd.DataFrame, or str
Either a filename containing focal mechanism parameters as columns,
a 1- or 2-D array with the same, or a dictionary. If a filename or
array, `convention` is required so we know how to interpret the
columns/entries. If a dictionary, the following combinations of
keys are supported; these determine the convention. Dictionary
may contain values for a single focal mechanism or lists of
values for many focal mechanisms. A Pandas DataFrame may
optionally contain columns latitude, longitude, depth,
plot_longitude,
and/or plot_latitude instead of passing them to the meca method.
- ``"aki"`` — *strike, dip, rake, magnitude*
- ``"gcmt"`` — *strike1, dip1, rake1, strike2, dip2, rake2,
mantissa, exponent*
- ``"mt"`` — *mrr, mtt, mff, mrt, mrf, mtf, exponent*
- ``"partial"`` — *strike1, dip1, strike2, fault_type, magnitude*
- ``"principal_axis"`` — *t_exponent, t_azimuth, t_plunge,
n_exponent, n_azimuth, n_plunge, p_exponent, p_azimuth, p_plunge,
exponent*
scale: str
Adjusts the scaling of the radius of the beachball, which is
proportional to the magnitude. Scale defines the size for
magnitude = 5 (i.e. scalar seismic moment M0 = 4.0E23 dynes-cm)
longitude: int, float, list, or 1d numpy array
Longitude(s) of event location. Ignored if `spec` is not a
dictionary. List must be the length of the number of events.
Ignored if `spec` is a DataFrame and contains a 'longitude' column.
latitude: int, float, list, or 1d numpy array
Latitude(s) of event location. Ignored if `spec` is not a
dictionary. List must be the length of the number of events.
Ignored if `spec` is a DataFrame and contains a 'latitude' column.
depth: int, float, list, or 1d numpy array
Depth(s) of event location in kilometers. Ignored if `spec` is
not a dictionary. List must be the length of the number of events.
Ignored if `spec` is a DataFrame and contains a 'depth' column.
convention: str
``"aki"`` (Aki & Richards), ``"gcmt"`` (global CMT), ``"mt"``
(seismic moment tensor), ``"partial"`` (partial focal mechanism),
or ``"principal_axis"`` (principal axis). Ignored if `spec` is a
dictionary or dataframe.
component: str
The component of the seismic moment tensor to plot. ``"full"`` (the
full seismic moment tensor), ``"dc"`` (the closest double couple
with zero trace and zero determinant), ``"deviatoric"`` (zero
trace)
plot_longitude: int, float, list, or 1d numpy array
Longitude(s) at which to place beachball, only used if `spec` is a
dictionary. List must be the length of the number of events.
Ignored if `spec` is a DataFrame and contains a 'plot_longitude'
column.
plot_latitude: int, float, list, or 1d numpy array
Latitude(s) at which to place beachball, only used if `spec` is a
dictionary. List must be the length of the number of events.
Ignored if `spec` is a DataFrame and contains a 'plot_latitude'
column.
offset: bool or str
Offsets beachballs to the longitude, latitude specified in
the last two columns of the input file or array,
or by `plot_longitude` and `plot_latitude` if provided. A small
circle is plotted at the initial location and a line connects
the beachball to the circle. Specify pen and optionally append
``+ssize`` to change the line style and/or size of the circle.
no_clip : bool
Does NOT skip symbols that fall outside frame boundary specified by
*region* [Default is False, i.e. plot symbols inside map frame
only].
{J}
{R}
{B}
{V}
{XY}
{p}
{t}
"""
# pylint warnings that need to be fixed
# pylint: disable=too-many-locals
# pylint: disable=too-many-nested-blocks
# pylint: disable=too-many-branches
# pylint: disable=no-self-use
# pylint: disable=too-many-statements
def set_pointer(data_pointers, spec):
"""Set optional parameter pointers based on DataFrame or dict, if
those parameters are present in the DataFrame or dict."""
for param in list(data_pointers.keys()):
if param in spec:
# set pointer based on param name
data_pointers[param] = spec[param]
def update_pointers(data_pointers):
"""Updates variables based on the location of data, as the
following data can be passed as parameters or it can be
contained in `spec`."""
# update all pointers
longitude = data_pointers["longitude"]
latitude = data_pointers["latitude"]
depth = data_pointers["depth"]
plot_longitude = data_pointers["plot_longitude"]
plot_latitude = data_pointers["plot_latitude"]
return (longitude, latitude, depth, plot_longitude, plot_latitude)
# Check the spec and parse the data according to the specified
# convention
if isinstance(spec, (dict, pd.DataFrame)):
# dicts and DataFrames are handed similarly but not identically
if (
longitude is None or latitude is None or depth is None
) and not isinstance(spec, (dict, pd.DataFrame)):
raise GMTError("Location not fully specified.")
param_conventions = {
"AKI": ["strike", "dip", "rake", "magnitude"],
"GCMT": ["strike1", "dip1", "dip2", "rake2", "mantissa", "exponent"],
"MT": ["mrr", "mtt", "mff", "mrt", "mrf", "mtf", "exponent"],
"PARTIAL": ["strike1", "dip1", "strike2", "fault_type", "magnitude"],
"PRINCIPAL_AXIS": [
"t_exponent",
"t_azimuth",
"t_plunge",
"n_exponent",
"n_azimuth",
"n_plunge",
"p_exponent",
"p_azimuth",
"p_plunge",
"exponent",
],
}
# to keep track of where optional parameters exist
data_pointers = {
"longitude": longitude,
"latitude": latitude,
"depth": depth,
"plot_longitude": plot_longitude,
"plot_latitude": plot_latitude,
}
# make a DataFrame copy to check convention if it contains
# other parameters
if isinstance(spec, (dict, pd.DataFrame)):
# check if a copy is necessary
copy = False
drop_list = []
for pointer in data_pointers:
if pointer in spec:
copy = True
drop_list.append(pointer)
if copy:
spec_conv = spec.copy()
# delete optional parameters from copy for convention check
for item in drop_list:
del spec_conv[item]
else:
spec_conv = spec
# set convention and focal parameters based on spec convention
convention_assigned = False
for conv in param_conventions:
if set(spec_conv.keys()) == set(param_conventions[conv]):
convention = conv.lower()
foc_params = param_conventions[conv]
convention_assigned = True
break
if not convention_assigned:
raise GMTError(
"Parameters in spec dictionary do not match known " "conventions."
)
# create a dict type pointer for easier to read code
if isinstance(spec, dict):
dict_type_pointer = list(spec.values())[0]
elif isinstance(spec, pd.DataFrame):
# use df.values as pointer for DataFrame behavior
dict_type_pointer = spec.values
# assemble the 1D array for the case of floats and ints as values
if isinstance(dict_type_pointer, (int, float)):
# update pointers
set_pointer(data_pointers, spec)
# look for optional parameters in the right place
(
longitude,
latitude,
depth,
plot_longitude,
plot_latitude,
) = update_pointers(data_pointers)
# Construct the array (order matters)
spec = [longitude, latitude, depth] + [spec[key] for key in foc_params]
# Add in plotting options, if given, otherwise add 0s
for arg in plot_longitude, plot_latitude:
if arg is None:
spec.append(0)
else:
if "C" not in kwargs:
kwargs["C"] = True
spec.append(arg)
# or assemble the 2D array for the case of lists as values
elif isinstance(dict_type_pointer, list):
# update pointers
set_pointer(data_pointers, spec)
# look for optional parameters in the right place
(
longitude,
latitude,
depth,
plot_longitude,
plot_latitude,
) = update_pointers(data_pointers)
# before constructing the 2D array lets check that each key
# of the dict has the same quantity of values to avoid bugs
list_length = len(list(spec.values())[0])
for value in list(spec.values()):
if len(value) != list_length:
raise GMTError(
"Unequal number of focal mechanism "
"parameters supplied in 'spec'."
)
# lets also check the inputs for longitude, latitude,
# and depth if it is a list or array
if (
isinstance(longitude, (list, np.ndarray))
or isinstance(latitude, (list, np.ndarray))
or isinstance(depth, (list, np.ndarray))
):
if (len(longitude) != len(latitude)) or (
len(longitude) != len(depth)
):
raise GMTError(
"Unequal number of focal mechanism "
"locations supplied."
)
# values are ok, so build the 2D array
spec_array = []
for index in range(list_length):
# Construct the array one row at a time (note that order
# matters here, hence the list comprehension!)
row = [longitude[index], latitude[index], depth[index]] + [
spec[key][index] for key in foc_params
]
# Add in plotting options, if given, otherwise add 0s as
# required by GMT
for arg in plot_longitude, plot_latitude:
if arg is None:
row.append(0)
else:
if "C" not in kwargs:
kwargs["C"] = True
row.append(arg[index])
spec_array.append(row)
spec = spec_array
# or assemble the array for the case of pd.DataFrames
elif isinstance(dict_type_pointer, np.ndarray):
# update pointers
set_pointer(data_pointers, spec)
# look for optional parameters in the right place
(
longitude,
latitude,
depth,
plot_longitude,
plot_latitude,
) = update_pointers(data_pointers)
# lets also check the inputs for longitude, latitude, and depth
# just in case the user entered different length lists
if (
isinstance(longitude, (list, np.ndarray))
or isinstance(latitude, (list, np.ndarray))
or isinstance(depth, (list, np.ndarray))
):
if (len(longitude) != len(latitude)) or (
len(longitude) != len(depth)
):
raise GMTError(
"Unequal number of focal mechanism locations supplied."
)
# values are ok, so build the 2D array in the correct order
spec_array = []
for index in range(len(spec)):
# Construct the array one row at a time (note that order
# matters here, hence the list comprehension!)
row = [longitude[index], latitude[index], depth[index]] + [
spec[key][index] for key in foc_params
]
# Add in plotting options, if given, otherwise add 0s as
# required by GMT
for arg in plot_longitude, plot_latitude:
if arg is None:
row.append(0)
else:
if "C" not in kwargs:
kwargs["C"] = True
row.append(arg[index])
spec_array.append(row)
spec = spec_array
else:
raise GMTError(
"Parameter 'spec' contains values of an unsupported type."
)
# Add condition and scale to kwargs
if convention == "aki":
data_format = "a"
elif convention == "gcmt":
data_format = "c"
elif convention == "mt":
# Check which component of mechanism the user wants plotted
if component == "deviatoric":
data_format = "z"
elif component == "dc":
data_format = "d"
else: # component == 'full'
data_format = "m"
elif convention == "partial":
data_format = "p"
elif convention == "principal_axis":
# Check which component of mechanism the user wants plotted
if component == "deviatoric":
data_format = "t"
elif component == "dc":
data_format = "y"
else: # component == 'full'
data_format = "x"
# Support old-school GMT format options
elif convention in ["a", "c", "m", "d", "z", "p", "x", "y", "t"]:
data_format = convention
else:
raise GMTError("Convention not recognized.")
# Assemble -S flag
kwargs["S"] = data_format + scale
kind = data_kind(spec)
with Session() as lib:
if kind == "matrix":
file_context = lib.virtualfile_from_matrix(np.atleast_2d(spec))
elif kind == "file":
file_context = dummy_context(spec)
else:
raise GMTInvalidInput("Unrecognized data type: {}".format(type(spec)))
with file_context as fname:
arg_str = " ".join([fname, build_arg_string(kwargs)])
lib.call_module("meca", arg_str)